cortexpy
v0.46.5
Overview of Cortexpy
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On link-informed graph traversal
API reference
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cortexpy
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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__getitem__() (cortexpy.graph.parser.random_access.RandomAccess method)
(cortexpy.links.LinkedGraphTraverser method)
__iter__() (cortexpy.graph.parser.random_access.RandomAccess method)
A
add_edge() (cortexpy.graph.cortex.CortexDiGraph method)
B
build_cortex_graph() (in module cortexpy.graph.cortex)
C
choose() (cortexpy.links.UnitigLinkWalker method)
choose_branch() (cortexpy.links.LinkWalker method)
connect_kmers() (cortexpy.graph.cortex.CortexGraphMapping method)
(in module cortexpy.graph.parser.kmer)
ConsistentCortexDiGraph (class in cortexpy.graph.cortex)
CortexDiGraph (class in cortexpy.graph.cortex)
CortexGraphMapping (class in cortexpy.graph.cortex)
cortexpy.graph.cortex (module)
cortexpy.graph.interactor (module)
cortexpy.graph.parser.header (module)
cortexpy.graph.parser.kmer (module)
cortexpy.graph.parser.random_access (module)
cortexpy.links (module)
cortexpy.utils (module)
D
disconnect_kmers() (cortexpy.graph.cortex.CortexGraphMapping method)
(in module cortexpy.graph.parser.kmer)
E
edge_nodes_of() (in module cortexpy.graph.interactor)
F
find_all_neighbors() (in module cortexpy.graph.parser.kmer)
from_stream() (cortexpy.graph.parser.header.Header class method)
G
get_canonical_edge() (in module cortexpy.graph.cortex)
get_kmer_for_string() (cortexpy.graph.parser.random_access.RandomAccess method)
H
Header (class in cortexpy.graph.parser.header)
I
increment_color_coverage() (cortexpy.graph.parser.kmer.Kmer method)
items() (cortexpy.graph.parser.random_access.RandomAccess method)
K
Kmer (class in cortexpy.graph.parser.kmer)
kmerize_contig() (in module cortexpy.utils)
kmerize_fasta() (in module cortexpy.utils)
L
lexlo (in module cortexpy.utils)
link_successors() (cortexpy.links.UnitigLinkWalker method)
LinkedGraphTraverser (class in cortexpy.links)
,
[1]
LinkOrientation (class in cortexpy.links)
LinkWalker (class in cortexpy.links)
load_kmer() (cortexpy.links.LinkWalker method)
M
make_copy_of_color_for_kmer_graph() (in module cortexpy.graph.interactor)
N
nbunch_iter() (cortexpy.graph.cortex.CortexDiGraph method)
next_junction_bases() (cortexpy.links.LinkWalker method)
R
RandomAccess (class in cortexpy.graph.parser.random_access)
S
SeedKmerStringIterator (class in cortexpy.graph.interactor)
StringKmerConverter (class in cortexpy.graph.parser.kmer)
successors() (cortexpy.links.UnitigLinkWalker method)
T
to_uints() (cortexpy.graph.parser.kmer.StringKmerConverter method)
U
UnitigLinkWalker (class in cortexpy.links)
V
values() (cortexpy.graph.parser.random_access.RandomAccess method)
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