Usage examples¶
Python API¶
Check if a cortex graph contains a kmer¶
We can use the After you have installed cortexpy, you can start using it to access cortex files from python:
from cortexpy.graph.parser.random_access import RandomAccess
# make sure to open the cortex graph in binary mode
with open('my_graph.ctx', 'rb') as fh:
ra = RandomAccess(fh)
# let's see if our favorite kmer is in the graph
if 'AAA' in ra:
print('AAA exists in my_graph.ctx!')